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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs4458929 chr9:72000216 A/T SRPK3 chrX:153041867-153051187:+ -0.36 -6.04 3.12E-9 Box Plot
THCA rs4459309 chr11:49039483 G/A FOLH1B chr11:89372395-89431886:+ 0.43 6.41 3.46E-10 Box Plot
THCA rs4460665 chr1:121178386 G/C NBPF14 chr1:148003642-148025863:- 0.43 10.12 5.89E-22 Box Plot
THCA rs4463839 chr11:50738763 G/A FOLH1B chr11:89372395-89431886:+ 0.35 5.95 5.27E-9 Box Plot
THCA rs4464325 chr2:132270145 C/T CCDC74B chr2:130896860-130902707:- 0.41 7.37 7.57E-13 Box Plot
THCA rs4465573 chr15:30955149 T/C CHRNA7 chr15:32215641-32465219:+ 0.28 6.65 8.16E-11 Box Plot
THCA rs446575 chr17:63104084 C/A MFAP3L chr4:170907748-170954182:- -0.32 -5.95 5.3E-9 Box Plot
THCA rs4467037 chr15:31048653 T/C CHRNA7 chr15:32215641-32465219:+ 0.31 6.99 9.19E-12 Box Plot
THCA rs4469501 chr8:11824956 C/T SGK223 chr8:8175258-8244008:- 0.35 6.47 2.39E-10 Box Plot
THCA rs4471699 chr16:30320307 G/T NPIPL3 chr16:21413451-21458484:- 0.2 5.98 4.43E-9 Box Plot
THCA rs4471717 chr17:15621373 A/G ZNF286B chr17:18561742-18585575:- 0.69 12.47 4.12E-31 Box Plot
THCA rs4473777 chr5:45968862 T/C LOC647121 chr1:121260910-121313686:+ 0.37 7.71 7.27E-14 Box Plot
THCA rs4476823 chr6:26922238 T/C ZNF322B chr9:99957633-99961910:- 0.55 10.12 6.22E-22 Box Plot
THCA rs4478898 chr10:88917146 T/C FAM35B chr10:46897641-46939143:+ 0.37 7.1 4.45E-12 Box Plot
THCA rs4484447 chr5:46048859 A/T LOC647121 chr1:121260910-121313686:+ 0.38 8.25 1.53E-15 Box Plot